JOGL
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JOGL is a library that allows Java programs to use advanced OpenGL graphics capabilities. The newest version is currently still in development, but is already very stable for general use.
Since there are no easy installers yet, we provide installers for Windows here:
Note: The architecture (32 bit or 64 bit) should match the Java JVM you are using for Protégé!
After installation of the libraries, reboot your system.
For other platforms, choose one of the JOGL downloads.